Published Data
General useful data sources
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Consortium of European Social Science Data Archives (CESSDA) provides large-scale, integrates, and sustainable data services targetted at social science work. They bring together arcgives of social science data from across Europe. They promote social science findings, and support research and coorperation at both national and international levels.
Data available on the European COVID-19 Data Portal
Data available from research groups in Sweden
The list of available data on this Portal was curated manually until February 2022. After February 2022, we instead began to use a script to query the Europe PMC database (making use of their API) in order to locate relevant publications. We only include data from publications about COVID-19/SARS-CoV-2 that BOTH involve at least one author affiliated with a Swedish research institution AND openly share reusable data and/or code. The code used for the query is written in Python and, as with all of our code, it is openly available in GitHub. We welcome others to reuse it and to repurpose it for other pathogens.
The lists of available data may not be exhaustive as the script used to generate it does not search for every possible database/repository. If you find that a dataset is missing, or that the information related to it is incorrect, please get in touch with us
Last updated: 2024-09-04
Data types
Publication | Available dataset and code |
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Mao Y., Chen J., Liu X., Dang J., et al (2024)
Springer Science and Business Media LLC
DOI: 10.1186/s12889-024-18473-2
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Maj A., Matynia M., Michalak N., Bis A., et al (2024)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0299638
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Andrighetto G., Szekely A., Guido A., Gelfand M., et al (2024)
Springer Science and Business Media LLC
DOI: 10.1038/s41467-024-44999-5
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Vriens E., Szekely A., Lipari F., Antonioni A., et al (2024)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-024-53427-z
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Wixe S., Lobo J., Mellander C., Bettencourt L. M. A. (2024)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-024-52988-3
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Andreasson A., Tognetti A., Jones M., Lekander M., et al (2023)
Elsevier BV
DOI: 10.1016/j.bbih.2023.100708
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Iyadurai L., Highfield J., Kanstrup M., Markham A., et al (2023)
Springer Science and Business Media LLC
DOI: 10.1038/s41398-023-02578-0
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Xiao S., Dang J. (2023)
Frontiers Media SA
DOI: 10.3389/fpsyg.2023.1124627
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Lindberg D., Elvén M., Nilsson K. W., Von Heideken Wågert P., et al (2023)
MDPI AG
DOI: 10.3390/ijerph20043642
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Lin B. B., Chang C., Andersson E., Astell-Burt T., et al (2023)
MDPI AG
DOI: 10.3390/ijerph20043559
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Buchanan E. M., Lewis S. C., Paris B., Forscher P. S., et al (2023)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-022-01811-7
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Francis G., Thunell E. (2023)
Elsevier BV
DOI: 10.1016/j.concog.2023.103464
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Schneider F. H., Campos-Mercade P., Meier S., Pope D., et al (2023)
Springer Science and Business Media LLC
DOI: 10.1038/s41586-022-05512-4
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Kurowska A., Barardehi I. H., Fuller S., Petts R. J., et al (2023)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-022-01880-8
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Baetzner A. S., Wespi R., Hill Y., Gyllencreutz L., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1186/s13049-022-01056-8
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Svenson O. (2022)
Springer Science and Business Media LLC
DOI: 10.1007/s44155-022-00027-9
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Wambua J., Loedy N., Jarvis C. I., Wong K. L., et al (2022)
Cold Spring Harbor Laboratory
DOI: 10.1101/2022.11.25.22282676
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Bartels S. L., Shaaban C. E., Brum W. S., Welikovitch L. A., et al (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0277470
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Vieira J. B., Pierzchajlo S., Jangard S., Marsh A. A., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-022-23415-2
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Pick C. M., Ko A., Wormley A. S., Wiezel A., et al (2022)
Elsevier BV
DOI: 10.1016/j.evolhumbehav.2022.09.003
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Kłosowska J., Bajcar E. A., Bieniek H., Brączyk J., et al (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-022-17303-y
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Ramineni V., Millroth P., Iyadurai L., Jaki T., et al (2022)
Cold Spring Harbor Laboratory
DOI: 10.1101/2022.10.06.22280777
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Dang J., Xiao S. (2022)
Frontiers Media SA
DOI: 10.3389/fpubh.2022.996036
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Andersson P. A., Tinghög G., Västfjäll D. (2022)
Springer Science and Business Media LLC
DOI: 10.1057/s41599-022-01257-7
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Ågren P., Knoph E., Berntsson Svensson R. (2022)
Springer Science and Business Media LLC
DOI: 10.1007/s10664-022-10176-9
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Olofsson T., Vilhelmsson A. (2022)
Elsevier BV
DOI: 10.1016/j.dib.2021.107698
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Raffetti E., Mondino E., Di Baldassarre G. (2022)
Springer Science and Business Media LLC
DOI: 10.1038/s41598-022-13218-w
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O’ Mahony L., Buwalda T., Blair M., Forde B., et al (2022)
F1000 Research Ltd
DOI: 10.12688/hrbopenres.13516.1
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Ledebur K., Kaleta M., Chen J., Lindner S. D., et al (2022)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pcbi.1009973
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Sheen J. K., Haushofer J., Metcalf C. J. E., Kennedy‐Shaffer L. (2022)
Wiley
DOI: 10.1002/sim.9365
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Elvén M., Kerstis B., Stier J., Hellström C., et al (2022)
MDPI AG
DOI: 10.3390/ijerph19052558
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Rück C., Mataix-Cols D., Malki K., Adler M., et al (2022)
BMJ
DOI: 10.1136/bmjopen-2021-049302
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Beridze G., Triolo F., Grande G., Fratiglioni L., et al (2022)
BMJ
DOI: 10.1136/bmjopen-2021-058422
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Mondino E., Di Baldassarre G., Mård J., Ridolfi E., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41597-020-00778-7
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Månsson V., Wall H., Berman A. H., Jayaram-Lindström N., et al (2021)
Frontiers Media SA
DOI: 10.3389/fpsyg.2021.708037
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Dahlen M., Thorbjørnsen H., Sjåstad H., von Heideken Wågert P., et al (2021)
MDPI AG
DOI: 10.3390/ijerph182010680
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Kapiriri L., Kiwanuka S., Biemba G., Velez C., et al (2021)
Oxford University Press (OUP)
DOI: 10.1093/heapol/czab113
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Conde E., Martínez-Aranda L. M., Sanz G., López de Subijana C., et al (2021)
Frontiers Media SA
DOI: 10.3389/fpsyg.2021.736499
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Nilsson N., Bendix M., Öhlund L., Widerström M., et al (2021)
MDPI AG
DOI: 10.3390/jcm10194411
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Millroth P., Frey R. (2021)
Elsevier BV
DOI: 10.1016/j.janxdis.2021.102454
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Mäkelä P., Rossow I., Moan I. S., Bye E. K., et al (2021)
Wiley
DOI: 10.1002/mpr.1892
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Ohrnberger J., Segal A. B., Forchini G., Miraldo M., et al (2021)
Oxford University Press (OUP)
DOI: 10.1093/eurpub/ckab138
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Kerr J. R., Schneider C. R., Recchia G., Dryhurst S., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2020-048025
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Wang K., Goldenberg A., Dorison C. A., Miller J. K., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41562-021-01173-x
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Manica M., Guzzetta G., Riccardo F., Valenti A., et al (2021)
Nature Communications
DOI: https://doi.org/10.1038/s41467-021-24832-z
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Solís Arce J. S., Warren S. S., Meriggi N. F., Scacco A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1038/s41591-021-01454-y
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Meili K. W., Jonsson H., Lindholm L., Månsdotter A. (2021)
SAGE Publications
DOI: 10.1177/14034948211023633
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Lindholt M. F., Jørgensen F., Bor A., Petersen M. B. (2021)
BMJ
DOI: 10.1136/bmjopen-2020-048172
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Using a household-structured branching process to analyse contact tracing in the SARS-CoV-2 pandemic
Fyles M., Fearon E., Overton C., Wingfield T., et al (2021)
The Royal Society
DOI: 10.1098/rstb.2020.0267
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Hosen I., Pakpour A. H., Sakib N., Hussain N., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0251151
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Alrawashdeh H. M., Al-Tammemi A. B., Alzawahreh M. K., Al-Tamimi A., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1186/s12889-021-10897-4
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Steele J., Androulakis-Korakakis P., Carlson L., Williams D., et al (2021)
Springer Science and Business Media LLC
DOI: 10.1007/s40279-021-01438-5
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Pakpour A. H., Al Mamun F., Hosen I., Griffiths M. D., et al (2021)
Elsevier BV
DOI: 10.1016/j.dib.2020.106621
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Hothorn T., Bopp M., Günthard H., Keiser O., et al (2021)
BMJ
DOI: 10.1136/bmjopen-2020-042387
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Vlachos J., Hertegård E., B. Svaleryd H. (2021)
Proceedings of the National Academy of Sciences
DOI: 10.1073/pnas.2020834118
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Feldman M., Lacey Krylova V., Farrow P., Donovan L., et al (2021)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0244924
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Sallam M., Dababseh D., Eid H., Al-Mahzoum K., et al (2021)
MDPI AG
DOI: 10.3390/vaccines9010042
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Lane J. C. E., Weaver J., Kostka K., Duarte-Salles T., et al (2020)
Oxford University Press (OUP)
DOI: 10.1093/rheumatology/keaa771
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Lundon D. J., Mohamed N., Lantz A., Goltz H. H., et al (2020)
Frontiers Media SA
DOI: 10.3389/fpubh.2020.571364
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Duchene S., Featherstone L., de Blasio B. F., Holmes E. C., et al (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.11.18.20233767
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Pellert M., Lasser J., Metzler H., Garcia D. (2020)
Frontiers Media SA
DOI: 10.3389/fdata.2020.00032
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Bryant P., Elofsson A. (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.10.19.20215046
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Morgantini L. A., Naha U., Wang H., Francavilla S., et al (2020)
Public Library of Science (PLoS)
DOI: 10.1371/journal.pone.0238217
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Bryant P., Elofsson A. (2020)
Cold Spring Harbor Laboratory
DOI: 10.1101/2020.07.03.20145649
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